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Publikationsliste_kaschabek

Dr. Stefan Kaschabek
Technische Universität Bergakademie Freiberg

Technische Universität Bergakademie Freiberg
Interdisziplinäres Ökologisches Zentrum IÖZ Interdisciplinary Environmental Research Centre (2) Vorträge, Abstracts, Beiträge / Talks, Abstracts, contributions (1) Publikationen / Publications
Frank N, Lissner A, Winkelmann M, Hüttl R, Mertens F, Kaschabek SR, Schlömann M. 2010.
Degradation of selected (bio-)surfactants by bacterial cultures monitored by calorimetric methods.
Biodegradation 21(2): 179-191.
Gröning JAD, Tischler D, Kaschabek SR, Schlömann M. 2010. Optimization of a genome-walking
method to suit GC-rich template DNA from biotechnological relevant Actinobacteria. J. Bas.
Microbiol. 50(5): 499-502.
Tischler D, Kermer R, Gröning JAD, Kaschabek, SR, van Berkel WJH, Schlömann M. 2010. StyA1
and StyA2B from Rhodococcus opacus 1CP: a multifunctional styrene monooxygenase system.
J. Bacteriol 192(19): 5220-5227.
Tischler D, Eulberg D, Lakner S, Kaschabek SR, van Berkel WJH, Schlömann M. 2009.
Identification of a novel self-sufficient styrene monooxygenase from Rhodococcus opacus 1CP.
J. Bacteriol. 191(15): 4996-5009.
Feisthauer S, Wick LY, Kästner M, Kaschabek SR, Schlömann M, Richnow HH. 2008. Differences
of heterotrophic 13CO2 assimilation by Pseudomonas knackmussii strain B13 and Rhodococcus
opacus
1CP and potential impact on biomarker stable isotope probing. Environ. Microbiol. 10(6):
1641-1651.
Gröning J, Held C, Garten C, Claußnitzer U, Kaschabek SR, Schlömann M. 2007. Transformation of
diclofenac by the indigenous microflora of river sediments and identification of a major intermediate.
Chemosphere. 69(4): 509-516.
Nestler H, Kiesel B, Kaschabek SR, Mau M, Schlömann M, Balcke GU. 2007. Biodegradation of
chlorobenzene under hypoxic and mixed hypoxic-denitrifying conditions. Biodegradation. 18(6): 755-
767.
Niescher S, Wray V, Lang S, Kaschabek SR, Schlömann M. 2006. Identification and structural
characterisation of novel trehalose dinocardiomycolates from n-alkane-grown Rhodococcus opacus
1CP. Appl. Microbiol. Biotechnol. 70(5): 605-611.
Reineke W, Kaschabek SR, Pieper DH. 2006. Chlorinated Hydrocarbon Metabolism. In:
Encyclopedia of Life Sciences. Ed. John Wiley & Sons, Ltd. (www.els.net)
(10) Ferraroni M, Seifert J, Travkin VM, Thiel M, Kaschabek S, Scozzafava A, Golovleva L, Schlömann
M, Briganti F. 2005. Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation. J. Biol. Chem. 280(22): 21144-21154. (11) Thiel M, Kaschabek SR, Gröning J, Mau M, Schlömann M. 2005. Two unusual chlorocatechol
catabolic gene clusters in Sphingomonas sp. TFD44. Arch. Microbiol. 183(2): 80-94. (12) Fortin PD, Lo AT, Haro MA, Kaschabek SR, Reineke W, Eltis LD. 2005. Evolutionarily divergent
extradiol dioxygenases possess higher specificities for polychlorinated biphenyl metabolites. J. Bacteriol. 187(2): 415-421. (13) König C, Eulberg D, Gröning J, Lakner S, Seibert V, Kaschabek SR, Schlömann M. 2004. A linear
megaplasmid, p1CP, carrying the genes for chlorocatechol catabolism of Rhodococcus opacus 1CP. Microbiology. 150: 3075-3087. (14) Göbel M, Kranz OH, Kaschabek SR, Schmidt E, Pieper DH, Reineke W. 2004. Microorganisms
degrading chlorobenzene via a meta-cleavage pathway harbor highly similar chlorocatechol 2,3-dioxygenase-encoding gene clusters. Arch. Microbiol. 182(2-3): 147-156. (15) Moiseeva OV, Solyanikova IP, Kaschabek SR, Gröning J, Thiel M, Golovleva LA, Schlömann M.
2002. A new modified ortho cleavage pathway of 3-chlorocatechol degradation by Rhodococcus opacus 1CP: genetic and biochemical evidence. J. Bacteriol. 184(19): 5282-5292. (16) Pollmann K, Kaschabek S, Wray V, Reineke W, Pieper DH. 2002. Metabolism of
dichloromethylcatechols as central intermediates in the degradation of dichlorotoluenes by Ralstonia sp. strain PS12. J. Bacteriol. 184(19): 5261-5274. (17) Reineke W, Mars AE, Kaschabek SR, Janssen DB. 2002. Microbial degradation of chlorinated
aromatic compounds: The meta-cleavage pathway. Focus on Biotechnology 3A (Biotechnology for the Environment: Strategy and Fundamentals) 157-168. (18) Kaschabek SR, Kuhn B, Müller D, Schmidt E, Reineke W. 2002. Degradation of aromatics and
chloroaromatics by Pseudomonas sp. strain B13: purification and characterization of 3-oxoadipate:succinyl-coenzyme A (CoA) transferase and 3-oxoadipyl-CoA thiolase. J. Bacteriol. 184(1): 207-215. (19) Kaulmann U, Kaschabek SR, Schlömann M. 2001. Mechanism of chloride elimination from 3-chloro-
and 2,4-dichloro-cis,cis-muconate: new insight obtained from analysis of muconate cycloisomerase variant CatB-K169A. J. Bacteriol. 183(15): 4551-4561. (20) Seah SY, Labbé G, Kaschabek SR, Reifenrath F, Reineke W, Eltis LD. 2001. Comparative
specificities of two evolutionarily divergent hydrolases involved in microbial degradation of polychlorinated biphenyls. J. Bacteriol. 183(5): 1511-1516. (21) Hernáez MJ, Andújar E, Ríos JL, Kaschabek SR, Reineke W, Santero E. 2000. Identification of a
serine hydrolase which cleaves the alicyclic ring of tetralin. J. Bacteriol. 182(19): 5448-5453. (22) Andújar E, Hernáez MJ, Kaschabek SR, Reineke W, Santero E. 2000. Identification of an extradiol
dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product. J. Bacteriol. 182(3): 789-795. (23) Mars AE, Kingma J, Kaschabek SR, Reineke W, Janssen DB. 1999. Conversion of 3-chlorocatechol
by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31. J. Bacteriol. 181(4): 1309-1318. (24) Schlömann M., Kaschabek SR, Reineke, W. 1999. Pathways of bacterial degradation of
chloroaromatic compounds – spezial aspects of chlorocatechol pathways of Rhodococcus. Biologische Abwasserreinigung 12: 29-61. (25) Neusser D, Schmidt H, Spizek J, Novotna J, Peschke U, Kaschabek SR, Tichy P, Piepersberg W.
1998. The genes ImbB1 and ImbB2 of Streptomyces lincolnensis encode enzymes involved in the conversion of L-tyrosine to propylproline during the biosynthesis of the antibiotic lincomycin A. Archives of Microbiology 169: 322-332. (26) Kaschabek SR, Kasberg T, Müller D, Mars AE, Janssen DB, Reineke W. 1998. Degradation of
chloroaromatics: purification and characterization of a novel type of chlorocatechol 2,3-dioxygenase of Pseudomonas putida GJ31. J. Bacteriol. 180(2): 296-302. (27) Mars AE, Kasberg T, Kaschabek SR, van Agteren MH, Janssen DB, Reineke W. 1997. Microbial
degradation of chloroaromatics: use of the meta-cleavage pathway for mineralization of chlorobenzene. J. Bacteriol. 179(14): 4530-4537. (28) Kaschabek SR. 1996. Chemical synthesis of metabolites of microbial chloroaromatic
decompostition and study of substrate specificity of maleylacetate reductase from Pseudomonas sp. B13. Dissertation. Shaker-Verlag, Aachen. (29) Kaschabek SR, Reineke W. 1995. Maleylacetate reductase of Pseudomonas sp. strain B13:
specificity of substrate conversion and halide elimination. J. Bacteriol. 177(2): 320-325. (30) Kaschabek SR, Reineke W. 1994. Oxidation of halocatechols, a facile entry to cis,cis-2-halo-2,4-
hexadienedioic acids and 3-halo-5-oxo-2(5H)-furanylideneacetic acids. Journal of Organic Chemistry 59: 4001-4003 (31) Kaschabek SR, Reineke W. 1993. Degradation of chloroaromatics: purification and characterization
of maleylacetate reductase from Pseudomonas sp. strain B13. J. Bacteriol. 175(19): 6075-6081. (32) Kaschabek SR, Reineke W. 1992. Maleylacetate reductase of Pseudomonas sp. strain B13:
dechlorination of chloromaleylacetates, metabolites in the degradation of chloroaromatic compounds. Arch. Microbiol. 158(6): 412-417. (2) Vorträge, Abstracts, Beiträge / Talks, Abstracts, contributions
Oelschlägel M, Gröning JAD, Tischler D, Kaschabek SR, Schlömann M. 2011. A remarkable stable
and active styrene oxide isomerase from Rhodococcus opacus 1CP with high biotechnological
potential. Vortrag GWV002. VAAM-Jahrestagung, Karlsruhe. 03.-06.04.2011.
Gröning J, Niescher S, Riedel K, Spiegelhauer O, Kaschabek SR, Schlömann M. 2006. Degradation
of phenolic compounds and biosynthesis of trehalose lipids by rhodococci: isoenzymes and possible
functions. Vortrag. International Symposium on Environmental Biotechnology, Leipzig. 09.-
14.07.2006.
Seifert J, Simeonov P, Kaschabek SR, Schlömann M. 2006. A novel pathway for 2,4-
dichlorophenoxyacetate biodegradation via chlorohydroquinone in Nocardioides simplex 3E -
enzymatic and genetic aspects. Vortrag KC11. VAAM-Jahrestagung, Jena. 19.-22.03.2006.
Niescher S, Pilop C, Kaschabek SR, Schlömann M. 2004. Genetic aspects of trehaloselipid
biosynthesis in rhodococci. Vortrag KG007. VAAM-Jahrestagung, Braunschweig. 28.-31.03.2004.
Kaschabek SR. 2003. Trehaloselipide - Biotenside aus Rhodococcen. Mikrobiologische
Emulsionsbildner und Tenside zur Erhöhung der Bioverfügbarkeit von Umweltschadstoffen. Vortrag.
Mikrobiologisches Kolloquium der TU Dresden. 19.05.2003.
Niescher S, Pilop C, Wray V, Lang S, Kaschabek SR, Schlömann M. 2002. Structural
characterization of a trehaloselipid excreted by Rhodococcus opacus 1CP and molecular
identification of a trehalose-6-phosphate synthase involved in its biosynthesis. Biospektrum
Sonderausgabe, S. 80, PC015. VAAM-Jahrestagung, Göttingen. 24.-27.03.2002.
(3) Poster / Posters
Gröning JAD, Eulberg D, Kaschabek SR, Archer JAC, Schlömann M. 2011. Sequence Comparison
and Gene Deletion of Three Redundant. Poster EMP023. VAAM-Jahrestagung, Karlsruhe. 03.-
06.04.2011.
Hoffmann M, Kaschabek SR, Schüürmann G, Schlömann M. 2011. The environmental fate of the
NSAID fenoprofen – Microbial transformation processes in water sediment systems. Poster. VAAM-
Jahrestagung, Karlsruhe. 03.-06.04.2011.
Gröning JAD, Tischler D, Kaschabek SR, Schlömann M. 2010. Extending DNA sequence
information of a styA2B-cluster by applying the SiteFinding-PCR method on 2 Rhodococcus opacus
strains. Poster FTP42. VAAM-Jahrestagung, Hannover. 28.-31.03.2010.
Hoffmann M, Kaschabek SR, Schlömann M. 2010. Biotransformation of the NSAID fenoprofen in
environmental samples as well as by the filamentous fungus Epicoccum nigrum DSM 838 and
identification of a major intermediate. Poster. VAAM-Jahrestagung, Hannover. 28.-31.03.2010.
Tischler D, Eulberg D, Lakner S, van Berkel WJH, Kaschabek SR, Schlömann M. 2009. StyA2B
from Rhodococcus opacus 1CP, the first active representative of self-sufficient styrene
monooxygenases. Poster PX41. VAAM-Jahrestagung, Bochum. 08.-11.03.2009.
Gröning J, Held C, Garten C, Claußnitzer U, Kaschabek SR, Schlömann M. 2006. Transformation of
diclofenac by the indigenous microflora of river sediments and identification of a major product.
Poster 70. International Symposium on Environmental Biotechnology, Leipzig. 09.-14.07.2006.
Seifert J, Simeonov P, Kaschabek SR, Schlömann M. 2006. Chlorohydroquinone monooxygenase -
a novel enzyme in the 2,4-dichlorophenoxyacetate biodegradation pathway of Nocardioides simplex
3E - enzymatic and genetic aspects. Poster P27. 3rd European Meeting in Oxizymes. Oeiras,
Portugal. 07.-09.09.2006.
Seifert J, Simeonov P, Kaschabek SR, Schlömann M. 2006. A novel pathway for 2,4-
dichlorophenoxyacetate biodegradation via chlorohydroquinone in Nocardioides sipmplex 3E -
enzymatic and genetic aspects. Poster 116. International Symposium on Environmental
Biotechnology, Leipzig. 09.-14.07.2006.
Ferraroni M, Seifert J, Travkin VM, Kaschabek SR, Golovleva L, Schlömann M, Briganti F. 2005.
Structural and genetic aspects of polychlorinated aromatics biodegradation by Nocardioides simplex
3E. BioPerspectives, Poster LMP4. DECHEMA-Tagung, Wiesbaden. 10.-12.05.2005.
(10) Ferraroni M, Seifert J, Travkin VM, Kaschabek SR, Golovleva L, Schlömann M, Briganti F. 2005.
Structural and genetic aspects of polychlorinated aromatics biodegradation by Nocardioides simplex 3E. Poster STP015. VAAM-Jahrestagung, Göttingen. 25.-28.09.2005. (11) Gröning J, Eulberg D, Kaschabek SR, Schlömann M. 2005. Metabolic capability by genetic
versatility: (chloro-) phenol hydroxylases of Rhodococcus opacus 1CP. Poster MSP030. VAAM-Jahrestagung, Göttingen. 25.-28.09.2005. (12) Riedel K, Zimmermann K, Wray V, Kaschabek SR, Schlömann M. 2005. Formation of anionic
trehalose tetraester by Rhodococcus erythropolis B7g and the involvement of different trehalose-6-phosphate synthases herein. Poster MSP031. VAAM-Jahrestagung, Göttingen. 25.-28.09.2005. (13) Gröning J, Kaschabek SR, Schlömann M. 2004. Rapid transformation of Diclofenac by an
indigenous microflora from a river sediment. Poster PB034. VAAM-Jahrestagung, Braunschweig. 28.-31.03.2004. (14) König C, Eulberg D, Gröning J, Lakner J, Seibert V, Kaschabek SR, Schlömann M. 2004. A linear
megaplasmid, p1CP, carrying the two gene clusters for chlorocatechol catabolism of Rhodococcus opacus 1CP. Poster PB032. VAAM-Jahrestagung, Braunschweig. 28.-31.03.2004. (15) Niescher S, Kaschabek S, Schlömann M. 2003. Biochemical and molecular characterization of
enzymes involved in trehalose and trehaloselipid biosynthesis in Rhodococcus opacus strain 1CP. Biospektrum Sonderausgabe, S. 94, Poster PG012. VAAM-Jahrestagung, Berlin. 23.-26.03.2003. (16) Merlo Manzano A., Kaschabek S, Schlömann M. 2001. Characterisation of a mutant of
Rhodococcus opacus 1CP able to utilise 3-chlorobenzoate as sole carbon and energy source. Biospektrum Sonderausgabe S. 111, Poster PFU06. VAAM-Jahrestagung, Oldenburg. 25.-28.03.2001. (17) Kaschabek SR, Moiseeva OV, Golovleva LA, Schlömann M. 2000. Charakterization of a 3-
chlorocatechol catabolic gene cluster involved in 2-chlorophenol degradation by Rhodococcus opacus 1CP. Biospektrum Sonderausgabe S. 47, Poster 13.P.1.38. Beitrag auf der Tagung von DGHM, ÖGHMP und VAAM. 12.-16.03.2000. (18) Kaschabek SR, Solyanikova IP, Moiseeva OV, Golovleva LA, Schlömann M. 2000. Degradation of
2-chlorophenol by Rhodococcus opacus 1CP via dehalogenation of 5-chloromuconolactone to cis-dienelactone. Biospektrum Sonderausgabe S. 47, Poster 13.P.1.39. Tagung von DGHM, ÖGHMP und VAAM. 12.-16.03.2000.

Source: http://tu-freiberg.de/fakult2/bio/ag_mikrobio/personal/Publikationsliste_Kaschabek.pdf

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